"After consultation with Public Health Minister Thaddeus Ndikumana, the general assembly decided that the first and second division championships should continue to be played while observing the appropriate hygiene measures," the federation said in a statement after a meeting to discuss whether to proceed with the season.
There have been three confirmed cases of COVID-19 infections in Burundi, which along with Belarus, Nicaragua and Tadjikistan continues to sanction league football.
The season in Burundi, whose national team last year competed at the Africa Cup of Nations finals for the first time, has only three rounds left to play.
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