Vettel's 1:33.194 was the fastest time recorded, ahead of Raikkonen, in what was the first Ferrari front-row lock-out since 2008.
Valtteri Bottas was third fastest ahead of Hamilton who, was left frustrated with his fourth position ahead of Sunday's race.
'Mercedes had no grounds for complaint' - Horner
More to follow...
Verstappen: 'I don't feel sorry for Hamilton'
Abu Dhabi Grand Prix
'No assurances' Hamilton will race next season, says Mercedes boss Wolff